间隙灌溉和控释肥施用对稻田土壤产甲烷微生物的影响

间隙灌溉和控释肥施用影响稻田CH_4的产生和排放,然而其微生物机理尚不清楚。本研究通过采集稻季田间原位试验新鲜土样,采用核酸定量技术(qPCR)和末端限制性片段长度多态性(T-RFLP)技术,研究间隙灌溉和控释肥施用对稻田土壤产甲烷微生物群落丰度和结构的影响。结果表明,稻季CH_4排放量与古菌、产甲烷菌(mcr A基因)和甲烷氧化菌(pmo A基因)数量均呈极显著正相关关系(P0.01),而与细菌数量无显著相关性。间隙灌溉显著影响产甲烷菌和甲烷氧化菌数量的季节变化,其中烤田抑制产甲烷菌生长,而对甲烷氧化菌数量没有显著影响。与尿素相比,施用控释肥增加了稻田土壤细菌、古菌和产甲烷菌数量,降低了甲烷氧化菌数量。土壤古菌群落的优势T-RFs片段为184bp和391bp,其中184bp片段的相对丰度随着间隙灌溉的进行由45%~55%降低到23%~30%;而391bp片段则相反,其相对丰度由12%~18%增加到23%~26%。典型相关性分析(CCA)表明间隙灌溉显著影响土壤古菌群落结构(P0.001),而控释肥施用对土壤古菌群落结构没有明显影响。     

电活性菌藻膜耦合虹吸曝气技术处理海水养殖废水

人工湿地耦合微生物燃料电池(constructed wetland-microbial fuel cell,CW-MFC)被广泛应用于低碳氮比水产养殖废水处理。然而,高盐度抑制限制了其在海水养殖废水处理中的应用。针对高盐抑制,该研究利用海水底泥和海洋微藻构建电活性菌藻生物膜并结合虹吸曝气技术强化CW-MFC处理海水养殖废水。相比CW-MFC,强化系统对化学需氧量、总磷、总氮、磺胺甲恶唑、Cu²⁺的去除率分别提高33.46%,31.07%、25.64%、12.03%、24.25%。高通量测序显示,硝化和反硝化细菌Marinobacter、Muricauda、Xanthomarina生长状况良好;在MFC阳极和电活性菌藻生物膜表面,胞外呼细菌Geobacteraceae和Pseudomonas以及海洋微藻细菌Pseudooceanicola和Hoeflea被显著富集。研究结果表明,电活性菌藻生物膜耦合虹吸曝气技术可以有效提高CW-MFC系统处理海水养殖废水的效能。     

Infectious agent detections in archived Sockeye salmon (Oncorhynchus nerka) samples from British Columbia,Canada (1985–94)

In response to concerns that novel infectious agents were introduced through the movement of eggs as Atlantic salmon aquaculture developed in British Columbia (BC), Canada, we estimated the prevalence of infectious agents in archived return‐migrating Sockeye salmon, from before and during aquaculture expansion in BC (1985–94). Of 45 infectious agents assessed through molecular assays in 652 samples, 23 (7 bacterial, 2 viral and 14 parasitic) were detected in liver tissue from six regions in BC. Prevalence ranged from 0.005 to 0.83 and varied significantly by region and year. Agent diversity ranged from 0 to 12 per fish (median 4), with the lowest diversity observed in fish from the Trans‐Boundary and Central Coast regions. Agents known to be endemic in Sockeye salmon in BC, including Flavobacterium psychrophilum, Infectious haematopoietic necrosis virus, Ceratonova shasta and Parvicapsula minibicornis, were commonly observed. Others, such as Kudoa thyrsites and Piscirikettsia salmonis, were also detected. Surprisingly, infectious agents described only recently in BC salmon, Ca. Branchiomonas cysticola, Parvicapsula pseudobranchicola and Paranucleospora theridion, were also detected, indicating their potential presence prior to the expansion of the aquaculture industry. In general, our data suggest that agent distributions may not have substantially changed because of the salmon aquaculture industry.     

醉鱼糟制过程中酒糟液中的微生物群落

为探讨醉鱼糟制过程中酒糟液微生物群落多样性,本实验以大黄鱼为原料,用传统糟制工艺制作醉鱼,采用Illumina HiSeq2500高通量测序技术对醉鱼酒糟液菌群进行分析。结果显示,糟制过程中不同用盐量(2%、5%和10%)大黄鱼pH值在糟制前5 d或10 d稍有上升后逐渐降低,而TVB-N值在糟制期间逐渐下降,糟制30 d后的TVB-N值均低于30 mg/100 g,其中5%用盐量组最低;5%用盐量组在不同鱼糟比(1:1、1:1.5和1:2)下,大黄鱼pH和TVB-N值变化规律基本一致,说明糟制过程中醉鱼品质较稳定。5%用盐量组醉鱼酒糟液微生物高通量测序结果显示,鱼糟比为1:2的酒糟液Chao指数最大(167),表明物种丰度最高;鱼糟比为1:1的酒糟液Shannon指数最大(2.75),Simpson指数最小(0.109),表明细菌多样性最高;酒糟液涉及细菌17个门和1个未分类菌门,143个属,变形菌门、蓝细菌门和厚壁菌门是优势菌门,其中变形菌门占绝对优势;弧菌属、Chloroplast norank和肠杆菌属是优势菌属,发酵前期弧菌属占绝对优势。研究结果为醉鱼酒糟液微生物群落多样性研究提供理论依据,为控制糟制水产品卫生安全提供参考。     

不同处理对蛭石栽培的微型薯疮痂病防控效果及其微生态效应分析

通过田间小区试验评价了6个不同处理对蛭石栽培的微型马铃薯疮痂病的防效,并采用16S核糖体基因高通量测序技术研究了蛭石中细菌群落结构的变化。试验结果显示,棉隆+青霉菌34107处理对疮痂病防效最好(93.43%),显著高于对照药剂中生菌素处理(65.10%);而且商品薯的数量和经济效益也最高,分别达到348.3万个/hm~2和35.70万元/hm~2。蛭石中细菌相对丰度均以变形菌门(Proteobacteria)、放线菌门(Actinobacteria)和拟杆菌门(Bacteroidetes)最高,但不同处理之间丰度差异较大。除青霉菌34107处理外,其余处理细菌多样性指数均有不同程度的下降,但棉隆+青霉菌34107处理较中生菌素处理高,且显著高于棉隆处理(P0.05)。统计分析结果显示,总共185个属的丰度发生显著变化(P0.05),其中92个属(49.7%)为5个处理共有。棉隆和青霉菌34107处理发生显著变化属的数量最多(112个),而棉隆+青霉菌34107处理最少,仅30个属上调。在青霉菌34107和棉隆+青霉菌34107处理中,有益菌假单胞杆菌(Pseudomonas)数量显著增加,说明青霉菌34107处理,尤其是与棉隆协同使用,能有效促进蛭石中有益菌繁殖。相关性分析结果显示,蛭石中链霉菌丰度与55个属细菌呈显著正相关(P0.05,r0.6),包括中慢生根瘤菌(Mesorhizobium)、Solirubrobacter、包层不黏柄菌(Asticcacaulis)等,而与Dyadobacter、Pedobacter、Paenarthrobacter等8个属丰度呈显著负相关(P0.05,r-0.6)。研究结果表明,以棉隆消毒联合青霉菌34107处理对微型薯疮痂病防效最好,同时促进了蛭石中细菌多样性和有益菌的增殖。此外,还发现链霉菌的数量与土壤多种细菌密切相关。     

Mobile and readily available C and N fractions and their relationship to microbial biomass and selected enzyme activities in a sandy soil under different management systems

Within different land‐use systems such as agriculture, forestry, and fallow, the different morphology and physiology of the plants, together with their specific management, lead to a system‐typical set of ecological conditions in the soil. The response of total, mobile, and easily available C and N fractions, microbial biomass, and enzyme activities involved in C and N cycling to different soil management was investigated in a sandy soil at a field study at Riesa, Northeastern Germany. The management systems included agricultural management (AM), succession fallow (SF), and forest management (FM). Samples of the mineral soil (0—5, 5—10, and 10—30 cm) were taken in spring 1999 and analyzed for their contents on organic C, total N, NH₄⁺‐N and NO₃^—‐N, KCl‐extractable organic C and N fractions (Corg_(KCl) and Norg_(KCl)), microbial biomass C and N, and activities of β‐glucosidase and L‐asparaginase. With the exception of Norg_(KCl), all investigated C and N pools showed a clear relationship to the land‐use system that was most pronounced in the 0—5 cm profile increment. SF resulted in greater contents of readily available C (Corg_(KCl)), NH₄⁺‐N, microbial biomass C and N, and enzyme activities in the uppermost 5 cm of the soil compared to all other systems studied. These differences were significant at P ≤ 0.05 to P ≤ 0.001. Comparably high C_mic:C_org ratios of 2.4 to 3.9 % in the SF plot imply a faster C and N turnover than in AM and FM plots. Forest management led to 1.5‐ to 2‐fold larger organic C contents compared to SF and AM plots, respectively. High organic C contents were coupled with low microbial biomass C (78 μg g^—1) and N contents (10.7 μg g^—1), extremely low C_mic : C_org ratios (0.2—0.6 %) and low β‐glucosidase (81 μg PN g^—1 h^—1) and L‐asparaginase (7.3 μg NH₄‐N g^—1 2 h^—1) activities. These results indicate a severe inhibition of mineralization processes in soils under locust stands. Under agricultural management, chemical and biological parameters expressed medium values with exception for NO₃^—‐N contents which were significantly higher than in SF and FM plots (P ≤ 0.005) and increased with increasing soil depth. Nevertheless, the depth gradient found for all studied parameters was most pronounced in soils under SF. Microbial biomass C and N were correlated to β‐glucosidase and L‐asparaginase activity (r ≥ 0.63; P ≤ 0.001). Furthermore, microbial biomass and enzyme activities were related to the amounts of readily mineralizable organic C (i.e. Corg_(KCl)) with r ≥ 0.41 (P ≤ 0.01), suggesting that (1) KCl‐extractable organic C compounds from field‐fresh prepared soils represent an important C source for soil microbial populations, and (2) that microbial biomass is an important source for enzymes in soil. The Norg_(KCl) pool is not necessarily related to the size of microbial biomass C and N and enzyme activities in soil.<?show $6#>     

Biological activity and organic matter mineralization of soils amended with biowaste composts

This study aims to elucidate the significance of compost and soil characteristics for the biological activity of compost‐amended soils. Two agricultural soils (Ap horizon, loamy arable Orthic Luvisol and Ah horizon, sandy meadow Dystric Cambisol) and a humus‐free sandy mineral substrate were amended with two biowaste composts of different maturity in a controlled microcosm system for 18 months at 5 °C and 14 °C, respectively. Compost application increased the organic matter mineralization, the C_mic : C_org ratio, and the metabolic quotients significantly in all treatments. The total amount of C_org mineralized ranged from < 1 % (control plots) to 20 % (compost amended Dystric Cambisol). Incubation at 14 °C resulted in 2.7‐ to 4‐fold higher cumulative C_org mineralization compared to 5 °C. The C_mic : C_org ratios of the compost‐amended plots declined rapidly during the first 6 months and reached a similar range as the control plots at the end of the experiment. This effect may identify the compost‐derived microbial biomass as an easily degradable C source. Decreasing mineralization rates and metabolic quotients indicated a shift from a compost‐derived to a soil‐adapted microbial community. The C_org mineralization of the compost amended soils was mainly regulated by the compost maturity and the soil texture (higher activity in the sandy textured soils). The pattern of biological activity in the compost‐amended mineral substrate did not differ markedly from that of the compost‐amended agricultural soils, showing that the turnover of compost‐derived organic matter dominated the overall decay process in each soil. However, a priming effect occurring for the Dystric Cambisol indicated, that the effect of compost application may be soil specific.     

6 个不同品种荔枝果肉内生细菌群落多样性的高通量测序分析

【目的】内生菌在植物生长发育中发挥重要作用,分析不同品种荔枝果肉内生细菌群落结构及多样性,挖掘和利用潜在荔枝内生菌种资源,为进一步研究荔枝与内生菌互作关系提供参考依据。【方法】以 6 个不同品种荔枝的果肉组织为材料,PCR 扩增 16S rDNA 的 V3~V4 区,利用 MiSeq 高通量测序技术分析果肉组织内生细菌在门、科、属和种分类水平上的群落组成及优势菌群,结合 Alpha 多样性分析评估内生细菌群落多样性。【结果】对 6 个品种荔枝果肉内生细菌 16S rDNA 的 V3~V4 区进行扩增,共获得 2 139 086 条序列,其平均长度为 376 bp。不同品种荔枝果肉内生细菌群落在相对丰度和多样性上无显著差异。在门分类水平,变形菌门为主要优势细菌门类,其次为放线菌门。在科、属和种分类水平上,不同品种荔枝内生菌群落结构相似,但相对丰度占比不同。差异菌群分析结果显示,假单胞菌属（Pseudomonas）、果胶杆菌属（Pectobacterium）、苍白杆菌属（Ochrobactrum）和迪基氏菌属（Dickeya) 在优良品种‘鹅蛋荔’‘糯米糍’和‘观音绿’中显著富集,根瘤菌属（Bradyrhizobium）和变形菌属（Snodgrassella）只在‘鹅蛋荔’中富集。根据菌群相对丰度进行聚类分析,‘观音绿’‘糯米糍’和‘鹅蛋荔’的相似性更高。Alpha 多样性分析结果表明,6 种荔枝果肉内生菌群仅在丰度和多样性上存在差异,但未达到显著水平。【结论】该研究首次分析了 6 个不同品种荔枝果肉内生细菌的群落结构,并在优良荔枝品种中发现特有的微 生物类群富集现象,可为后续提升荔枝品质、开发利用内生菌提供理论依据和重要参考。     

不同调酸剂对种植玉米红壤微生物群落的影响

为研究红壤微生物丰度和群落组成对不同调酸剂的响应,分析影响碳/氮关键代谢过程微生物的变化,通过盆栽实验,设置不施肥（CK）、钙镁复合剂（L）、钙镁复合剂配施猪粪（ML）和钙镁复合剂配施秸秆（SL）4个处理,采用宏基因组测序技术,分析土壤细菌、真菌和古菌以及碳/氮代谢关键过程微生物。结果表明：L、ML和SL处理显著提高土壤pH值和交换性钙/镁,显著降低土壤交换性酸。调酸剂增加了细菌优势菌中的变形菌门相对丰度,降低了绿弯菌门和酸杆菌门相对丰度;降低了真菌优势菌中的毛霉菌门相对丰度;增加了古菌优势菌中的广古菌门和深古菌门的相对丰度,降低了奇古菌门的相对丰度。冗余分析结果显示,速效钾是影响土壤细菌和真菌群落结构的主要环境因子,土壤pH和有机碳是影响土壤真菌和古菌群落结构组成的关键因子。碳代谢过程的贡献度方面,变形菌门的贡献度在SL处理中最高,放线菌门和芽单胞菌门的贡献度在ML处理中最高。氮代谢过程中,各处理绿弯菌门对硝化作用的贡献率均超过80%。调酸降低了绿弯菌门和酸杆菌门在反硝化与硝酸盐异化还原过程中的贡献度,L与SL处理的变形菌门贡献度低于ML处理,而ML处理的放线菌门贡献度高于L与SL处...     

不同轮作模式对稻田土壤肥力和微生物群落结构的影响

为了探索不同水稻轮作模式对稻田土壤微生物群落结构的影响,以及与土壤养分供给的关系,本研究采用高通量测序技术对3种不同轮作模式下（水稻-小麦轮作、水稻-紫云英轮作、水稻-休耕）土壤细菌和真菌的群落结构变化进行分析,并进一步探讨了微生物群落结构与土壤养分含量之间的相互关系。结果表明：水稻-紫云英轮作模式能够明显改善稻田土壤的综合肥力,紫云英连续翻压还田后显著提高了土壤中总氮（TN）和有效氮（AN）的含量。土壤微生物群落结构方面,不同种植模式对细菌群落结构的影响大于真菌。水稻-紫云英轮作模式中优势菌群如酸杆菌门（Acidobacteriota）和子囊菌门（Ascomycota）等的富集有助于促进土壤生态系统的养分循环与生态健康。不同种植模式条件下土壤养分的变化如TN、AN、总钾（TK）及速效钾（AK）等可能是导致土壤细菌和真菌群落结构发生变化的主要驱动因素。稻田土壤中细菌群落结构对于土壤养分变化的敏感性要高于真菌。综合来看,水稻-紫云英轮作模式是更加适合水稻生态可持续栽培的种植模式,能够明显改善稻田土壤的综合肥力和土壤微生态环境。